nxCode - DNA Barcode Designer and
Decoder
for Next-Gen Sequencing
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| Main |
Download
barcode sets |
Download software |
Usage |
Algorithmic
details |
FAQ |
Download barcode sets |
| Page contents |
- Info
- Biochemical constraints
- Barcode sets (6 - 10 nuc. long)
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| Info |
Here
you can find some ready-to-use barcode sets. The files are all in
FASTA format, and can be used directly as input for the decoder (see
more about this in Usage).
To get
the best results, use a barcode set of minimal size (for
example if you need 15 barcodes, don't use a barcode set of size 110).
These
barcode sets were made using nxCodeBuilder, our barcode design tool.
Input parameters used in their making can be found in the
README file in each archive.
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| Bio-Chemical Constraints |
All Barcode sets on this page were made to meet the following biochemical constraints:
- GC content 25% - 65%
- No homopolymers (such as AAAA) of length 4 or more.
If these constraints do not suite your needs, please use nxCodeBuilder to create your own barcode set.
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Barcode sets |
| 6 nucleotides long barcode sets |
- 12 bar-codes - Expected decode accuracy 0.9995
- 52 bar-codes - Expected decode accuracy 0.992
- 114 bar-codes - Expected decode accuracy 0.982
- 402 bar-codes - Expected decode accuracy 0.96
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| 7 nucleotides long barcode sets |
- 13 bar-codes - Expected decode accuracy 0.9997
- 64 bar-codes - Expected decode accuracy 0.998
- 113 bar-codes - Expected decode accuracy 0.995
- 384 bar-codes - Expected decode accuracy 0.975
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| 8
nucleotides long barcode
sets |
- 13 bar-codes - Expected decode accuracy 0.9999
- 52 bar-codes - Expected decode accuracy 0.9992
- 90 bar-codes - Expected decode accuracy 0.9985
- 407 bar-codes - Expected decode accuracy 0.993
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| 9 nucleotides long
barcode sets |
- 122 bar-codes - Expected decode accuracy 0.999
- 413 bar-codes - Expected decode accuracy 0.997
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| 10 nucleotides long barcode sets |
- 131 bar-codes - Expected decode accuracy 0.9995
- 587 bar-codes - Expected decode accuracy 0.998
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