IntroductionUsing this package, you can run common unix command line tools from within a Galaxy server.
Available ToolsSimple Text Processing (complementing Galaxy's text manipulation tools):
- Remove Ending (of a file)
- Find & Replace text in line/column
- Select lines (from a file) by matching word list
Advance Text Processing Tools:
note: Galaxy already have some tools that perform similar operations (especially grep,cut,join, and uniq). The tools in this package provide extended options, and resemble more closely to the unix command line versions.
28-Mar-2009 - Version 0.1Initial public release.
23-May-2009 - Version 0.2Combined "find and replace" tools into one, with more options (regex or simple string search).
Added "Select lines by word list" tool.